Hi!
It would be probably better for the logic, yes. Because now, for example, if I select something from ‘Detector’ and ‘Instrument’, then depending on the checkbox logic, it is applied as it is a single filter. For multiple taxonomies, the taxonomy logic is also applied between the taxonomy filters.
But before you start doing that, I recommend trying out changing the checkbox logic to maybe the 3rd option first. It was specifically made for cases like this, where there is only one taxonomy, and the more of the filters is selected, the less items are displayed.