Yes, it can definitely cause a problem like this one.
In this case you have two possible options to test:
1. Turning off the “Execute Shortcodes” option on the index table Advanced Options panel: http://i.imgur.com/0bXXnr3.png
This will remove every shortcode, but any dynamic content as well, which might be still useful.
2. Trying to exclude the suspicious shortcodes one-by-one with the “Remove these shortcodes” option, and see if the index is generated: http://i.imgur.com/Hiy33IG.png
